Training Materials
Training Materials Overview
The following table provides an overview of training materials for NWB workshops and events. For more information about the different types of NWB events and how these materials are used, please see the Organizing NWB events page.
| Talk | Description | Duration | Video Examples | Slides |
|---|---|---|---|---|
| NWB Overview / Intro to NWB | An overview of the NWB software ecosystem | 1 hour | NWB Overview | NWB Overview Intro to NWB and DANDI |
| NWB GUIDE | Using NWB GUIDE to convert your data to NWB | 45 min | NWB GUIDE Tutorial | Walk through GUIDE tutorials |
| PyNWB and MatNWB APIs | Using the PyNWB and MatNWB APIs to create NWB files | 45 min | PyNWB and MatNWB APIs | Walk through PyNWB NWB File Basics tutorial and Intro to MatNWB |
| Extracellular Electrophysiology | Walking through the extracellular electrophysiology tutorials | 45 min | Extracellular Electrophysiology with PyNWB and MatNWB | Walk through Ecephys Tutorial |
| Optical Physiology | Walking through the optical physiology tutorials | 45 min | Optical Physiology with PyNWB and MatNWB | Walk through Ophys Tutorial |
| Intracellular Electrophysiology | Walking through the intracellular electrophysiology tutorials | 45 min | — | Intracellular Electrophysiology in NWB |
| Advanced Data I/O | Introduction to advanced data I/O methods and different NWB backends (Zarr, HDF5) | 30 min | Introduction to Advanced Data I/O | NWB Backends and Advanced Data I/O |
| Extensions in NWB | Introduction to creating and sharing extensions in NWB | 15 min | Introduction to Extensions to NWB | NWB Extensions |
| Terminologies and HERD | Introduction to terminologies and the HDMF External Resources Data in NWB | 15 min | Introduction to Terminologies and HERD | Walk through Defining Terminologies Notebook |
| Reading and Streaming NWB Files | Examples demos on how to interact with and stream data from NWB files on DANDI | 45 min | — | Reading and Streaming NWB Data |
| Using the DANDI Archive | Overview on publishing and uploading data, streaming data, and using DANDIHub | 45 min | Using the DANDI Archive | Intro to DANDI |
| Data Conversion | Overview of data conversion options including NeuroConv, PyNWB, and MatNWB | 1 hour | — | NWB Data Conversion |
| Searching for Data on DANDI | Overview of approaches to search and make advanced queries of data on DANDI | 30 min | — | Searching DANDI and Advanced Queries |
| Tour of NWB Analysis Software | An overview of different software packages for analysis and processing of NWB data | 30 min | — | Tour of NWB Analysis Software |
Related Lectures and Invited Speakers
- Introduction to OpenScope and DataBook: Contacts: Jerome Lecoq and Carter Peene
- SpikeInterface: Contact: Alessio Buccino
- Neural Data Analysis with Pynapple: Contact: Guillaume Viejo
- Calcium Imaging Processing with Suite2P: Contact: Carsen Stringer
- NeuroSift, Dendro, and LINDI: Contact: Jeremy Magland